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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Abcf1, ATP-binding cassette, sub-family F (GCN20), member 1
Sequence ID:NM_013854
Entrez Gene ID:224742
Ensembl ID:ENSMUSG00000038762

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 20.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35958167 - 35959591

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6485365Full LengthBC046965ATP-binding cassette, sub-family F (GCN20), member 1
6516514Full LengthBC063094ATP-binding cassette, sub-family F (GCN20), member 1
3588242IncompleteBC004811ATP-binding cassette, sub-family F (GCN20), member 1
4977293IncompleteBC040783ATP-binding cassette, sub-family F (GCN20), member 1
5035006IncompleteBC032250ATP-binding cassette, sub-family F (GCN20), member 1
30020697IncompleteBC068282ATP-binding cassette, sub-family F (GCN20), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038882  

Protein Infomation

NM_013854 NP_038882 Q6P542 ABC_tran

Related Sequences

AF213383 AAF31423 Q9JL47
BC004811 AAH04811 Q99K92
BC032250 AAH32250 A1A4B8
BC046965 AAH46965 Q5RL55
BC063094 AAH63094 Q6P542
BC068282 AAH68282 Q6P542
AK153057 BAE31683 Q3U6P1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Abcf1 NP_038882 R.norvegicus Abcf1 85493   NP_001103353 97
H.sapiens ABCF1 23 Gene Info NP_001020262 92
C.elegans abcf-1 179748   NP_506192 60
A.gambiae AgaP_AGAP012249 1280440   XP_320293 57
D.melanogaster CG1703 32112   NP_572736 56
A.thaliana GCN4 824619   NP_567001 47
S.pombe SPCC825.01 2539509   NP_588051 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)