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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab40c, Rab40c, member RAS oncogene family
Sequence ID:NM_139154
Entrez Gene ID:224624
Ensembl ID:ENSMUSG00000025730

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3.3|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 25883627 - 25919506

NM_139154 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
217952601905926020852
179620182602152426021746
201920962602201926022096
209721572602758226027642
215822182602823026028290
221924032605630926056493
240424662605659626056658

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5364768Full LengthBC027008Rab40c, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631893  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139154 NP_631893 Q8VHQ4 Ras
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC027008 AAH27008 Q8VHQ4
AF422144 AAL60515 Q8VHQ4
AK133766 BAE21828 Q3UZM8
AB232639 BAF02901 Q0PD11

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab40c NP_631893 R.norvegicus Rab40c 359728   NP_872616 100
H.sapiens RAB40C 57799 Gene Info NP_066991 99
A.gambiae AgaP_AGAP000841 1277354   XP_316810 66
D.melanogaster Rab40 32195   NP_727611 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)