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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spnb1, spectrin beta 1
Sequence ID:NM_013675
Entrez Gene ID:20741
Ensembl ID:ENSMUSG00000021061

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C3|12 33.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 76580489 - 76583776

 Exon Info From UCSC:
NM_013675

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087694Full LengthBC150783spectrin beta 1
40087684Full LengthBC129806spectrin beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038703  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013675 NP_038703   CH
Spectrin

Related Sequences

 
mRNAGenPeptSwissProt
M18641 AAA40126 P15508
S66283 AAB28600 P15508
BC117711 AAI17712 Q149M1
BC129806 AAI29807 Q3UGX2
BC150783 AAI50784 B2RX08
AK220551 BAD90537 Q5DTG9
AK147299 BAE27831 Q3UGX2
AK147684 BAE28073 Q3UGY4
AK147704 BAE28085 Q3UGX2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spnb1 NP_038703 R.norvegicus Sptb 314251   NP_997687 98
H.sapiens SPTB 6710 Gene Info NP_001020029 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)