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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Map6d1, MAP6 domain containing 1
Sequence ID:NM_198599
Entrez Gene ID:208158
Ensembl ID:ENSMUSG00000041205

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A3|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 20235247 - 20241320

NM_198599 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1727472023338120236111
274828652023665920236776
286632902024100620241430

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40091320Full LengthBC116220MAP6 domain containing 1
40091321Full LengthBC116221MAP6 domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_941001  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198599 NP_941001 Q14BB9 STOP

Related Sequences

 
mRNAGenPeptSwissProt
BC116220 AAI16221 Q14BB9
BC116221 AAI16222 Q14BB9
AK079603 BAC37698 Q14BB9
AK163656 BAE37442 Q14BB9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Map6d1 NP_941001 R.norvegicus Map6d1 363823   NP_001102314 95
H.sapiens MAP6D1 79929 Gene Info NP_079147 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)