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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gspt1, G1 to S phase transition 1
Sequence ID:NM_001130008
NM_146066
Entrez Gene ID:14852
Ensembl ID:ENSMUSG00000062203

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A1|16 3.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 11220400 - 11253742

 Exon Info From UCSC:
NM_001130008
NM_146066

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4015544Full LengthBC031640G1 to S phase transition 1
4506483Full LengthBC028325G1 to S phase transition 1
6515752IncompleteBC067207G1 to S phase transition 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666178  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130008 NP_001123480    
NM_146066 NP_666178 Q8R050 GTP_EFTU
GTP_EFTU_D3
GTP_EFTU_D2
PAM2

Related Sequences

 
mRNAGenPeptSwissProt
BC028325 AAH28325 Q8R050
BC031640 AAH31640 Q8R050
AB003502 BAA32526 Q8R050
AK032059 BAC27675 Q8CCV1
AK075996 BAC36107 Q8BPH0
AK134128 BAE22025 Q3UZ36
AK145785 BAE26649 Q3UL02

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gspt1 NP_001123480 R.norvegicus Gspt1 24420   NP_001003978 99
H.sapiens GSPT1 2935 Gene Info NP_002085 96
A.gambiae AgaP_AGAP009310 1280274   XP_320105 73
D.melanogaster Elf 34658   NP_477259 67
C.elegans H19N07.1 179537   NP_505824 59
S.pombe sup35 2539479   NP_588225 54
A.thaliana AT1G18070 838387   NP_001031063 53
S.cerevisiae SUP35 851752   NP_010457 52
N.crassa NCU04790 3876591   XP_960416 50
P.falciparum PF11_0245 810792   XP_001347916 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)