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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox6, SRY-box containing gene 6
Sequence ID:NM_001025559
NM_001025560
NM_011445
Entrez Gene ID:20679
Ensembl ID:ENSMUSG00000051910

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F1|7 55.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 115474468 - 115541689

 Exon Info From UCSC:
NM_001025559
NM_001025560
NM_011445

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30094413Full LengthBC067407SRY-box containing gene 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035575  NP_001020731  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001025559 NP_001020730    
NM_001025560 NP_001020731 Q8BSS6 HMG_box
NM_011445 NP_035575 P40645 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
U32614 AAC52263 Q3V1J7
P40645
BC067407 AAH67407 Q6NWW0
D61689 BAA09618 P40645
AK030713 BAC27094 Q8BSS6
AK132409 BAE21153 Q3V1J7
P40645
AJ010605 CAA09270 P40645
X65659 CAA46610 P40645

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox6 NP_001020730 R.norvegicus Sox6 293165   NP_001019922 99
H.sapiens SOX6 55553 Gene Info NP_201583 97
D.melanogaster Sox102F 43844   NP_001014695 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)