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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ctsc, cathepsin C
Sequence ID:NM_009982
Entrez Gene ID:13032
Ensembl ID:ENSMUSG00000030560

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, pancreas, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 D3-E1.1

Chromosomal Position (from UCSC)

Chromosomal Position:7: 88278134 - 88310308

NM_009982 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12829542660295426883
2834289542989695430041
4295959544559295445758
5967489544795495448106
7498649545069495450809
8659969545652295456653
99724729545790995459384

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30541061Full LengthBC067063cathepsin C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034112  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009982 NP_034112 Q8BQL3
P97821
EC 3.4.14.1 Peptidase_C1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U89269 AAB49457 P97821
Q3UBY5
EC 3.4.14.1
U74683 AAB58400 P97821
Q3UBY5
EC 3.4.14.1
BC067063 AAH67063 P97821
Q3UBY5
EC 3.4.14.1
AK002454 BAB22112 Q9DCV1  
AK049406 BAC33738 Q8BQL3  
AK088398 BAC40328 Q8C2L5  
AK146858 BAE27487 P97821
Q3UBY5
EC 3.4.14.1
AK150761 BAE29829 P97821
Q3UBY5
EC 3.4.14.1
AK151388 BAE30359 Q3UAF5  
AK151861 BAE30750 Q3U9B7  
AK152192 BAE31022 Q3U8J6  
AK152524 BAE31284 Q3U7T5  
AK167882 BAE39895 Q3TIF1  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsc NP_034112 R.norvegicus Ctsc 25423   NP_058793 90
H.sapiens CTSC 1075 Gene Info NP_001805 78
P.falciparum PF11_0174 810721   XP_001347845 41
P.falciparum PFL2290w 811510   XP_001350862 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)