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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scx, scleraxis
Sequence ID:NM_198885
Entrez Gene ID:20289
Ensembl ID:ENSMUSG00000034161

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D3|15 43.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 76457601 - 76459118

NM_198885 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17497628786776288615
75011367628951176289897

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30138970Full LengthBC062161scleraxis

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_942588  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198885 NP_942588 Q64124
Q53ZC3
HLH

Related Sequences

 
mRNAGenPeptSwissProt
S78079 AAB34266 Q64124
BC062161 AAH62161 Q6P6L3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scx NP_942588 R.norvegicus Scx 680712   NP_001123980 100
H.sapiens SCXB 642658 Gene Info NP_001073983 96
H.sapiens SCXA 100129885 Gene Info NP_001008272 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)