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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pdzrn3, PDZ domain containing RING finger 3
Sequence ID:NM_018884
Entrez Gene ID:55983
Ensembl ID:ENSMUSG00000035357

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 101149613 - 101377897

NM_018884 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12462101099600101102061
24632579101103212101103328
25802681101104187101104288
26822744101105863101105925
27452843101106907101107005
28442931101119127101119214
29323179101122193101122440
31803287101304387101304494
32883374101312132101312218
33754106101327159101327890

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3600603Full LengthBC010329PDZ domain containing RING finger 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061372  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018884 NP_061372 Q69ZS0 zf-C3HC4
PDZ
zf-TRAF

Related Sequences

 
mRNAGenPeptSwissProt
AF127084 AAF22131 Q69ZS0
AF127085 AAF22132 Q69ZS0
BC010329 AAH10329 Q69ZS0
HM560981 ADK56111 Q69ZS0
AK173098 BAD32376 Q69ZS0
AK135776 BAE22656 Q3UXA7
AK143226 BAE25317 Q3UPS8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdzrn3 NP_061372 R.norvegicus Pdzrn3 312607   XP_232226 98
H.sapiens PDZRN3 23024 Gene Info NP_055824 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)