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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ldlr, low density lipoprotein receptor
Sequence ID:NM_001252658
NM_001252659
NM_010700
Entrez Gene ID:16835
Ensembl ID:ENSMUSG00000032193

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9 5.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21723727 - 21748392


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5052599Full LengthBC019207low density lipoprotein receptor
5704871Full LengthBC053041low density lipoprotein receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034830  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252658 NP_001239587    
NM_001252659 NP_001239588    
NM_010700 NP_034830 P35951 EGF
Ldl_recept_a
Ldl_recept_b
EGF_CA

Related Sequences

 
mRNAGenPeptSwissProt
BC019207 AAH19207 Q8VCT0
BC053041 AAH53041 Q6GTJ9
AF425607 AAL23955 Q91ZJ1
AK037670 BAC29846 Q8CAV5
AK152103 BAE30950 Q3U8R7
AK160006 BAE35554 Q3TVR4
AK170264 BAE41671 Q3TDD1
X64414 CAA45759 P35951
Q6GTJ9
Z19521 CAA79581 P35951

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ldlr NP_034830 R.norvegicus Ldlr 300438   NP_786938 88
H.sapiens LDLR 3949 Gene Info NP_000518 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta