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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gpc5, glypican 5
Sequence ID:NM_175500
Entrez Gene ID:103978
Ensembl ID:ENSMUSG00000022112

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 E4|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 115370145 - 115428235

NM_175500 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1574115491436115492009
575736115532368115532529
7371431115768753115769447
14321565115798367115798500
15661691115827360115827485
16921812115951436115951556
18131972116187394116187553
19732885116923501116924413

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40059645Full LengthBC115712glypican 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780709  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175500 NP_780709 Q8CAL5 Glypican

Related Sequences

 
mRNAGenPeptSwissProt
AF001463 AAC12262 O70206
BC115712 AAI15713 Q8CAL5
AK038547 BAC30037 Q8CAL5
AK084223 BAC39143 Q8BNB0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gpc5 NP_780709 R.norvegicus Gpc5 306157   NP_001100755 95
H.sapiens GPC5 2262 Gene Info NP_004457 86
D.melanogaster dally 39013   NP_523983 30
A.gambiae AgaP_AGAP005799 1276466   XP_315813 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)