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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Fam20c, family with sequence similarity 20, member C
Sequence ID:NM_030565
Entrez Gene ID:80752
Ensembl ID:ENSMUSG00000025854

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 138755086 - 138758849

NM_030565 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11145139231034139232178
11461324139233754139233932
13251403139242582139242660
14041496139269140139269232
14971612139270947139271062
16131793139282160139282340
17941903139283204139283313
19041985139283427139283508
19862045139283989139284048
20463001139285061139286016

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_085042  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_030565 NP_085042 Q5MJS3 EC 2.7.11.1 DUF1193

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC004044 AAH04044 Q5MJS3 EC 2.7.11.1
BC025814 AAH25814 Q5MJS3 EC 2.7.11.1
BC025826 AAH25826 Q5MJS3 EC 2.7.11.1
AY778962 AAV91326 Q5MJS3 EC 2.7.11.1
AK220286 BAD90211 Q5MJS3 EC 2.7.11.1
CT010363 CAJ18570 Q5MJS3 EC 2.7.11.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Fam20c NP_085042 R.norvegicus Fam20c 304334   NP_001012238 97
H.sapiens FAM20C 56975 Gene Info NP_064608 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)