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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cux1, cut-like homeobox 1
Sequence ID:NM_009986
NM_198602
Entrez Gene ID:13047
Ensembl ID:ENSMUSG00000029705

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5 78.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 136248802 - 136565828

 Exon Info From UCSC:
NM_009986
NM_198602

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30547458Full LengthBC090847cut-like homeobox 1
5366857IncompleteBC054370cut-like homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034116  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009986 NP_034116   Homeobox
CUT
NM_198602 NP_941004    

Related Sequences

 
mRNAGenPeptSwissProt
U66249 AAB07138 P70381
U68542 AAB08430 P70403
U46684 AAB41146 P53564
U46683 AAC52775 P53564
AF004225 AAD12485 P53564
BC014289 AAH14289 P70403
BC054370 AAH54370 P70403
BC079570 AAH79570 Q6AXG1
BC090847 AAH90847 Q5BL05
AY037807 AAK59986 P53564
AB041595 BAA95078 Q9JJB6
AK006420 BAB24579 Q9CVV0
AK220173 BAD90358 P53564
AK131704 BAE20769 Q3V2M8
AK144932 BAE26142 Q3UMF6
X75013 CAA52922 P53564

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cux1 NP_034116 R.norvegicus Cux1 116639   XP_347164 92
H.sapiens CUX1 1523 Gene Info NP_001189472 86
C.elegans ceh-44 175372   NP_497576 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)