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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hdac4, histone deacetylase 4
Sequence ID:NM_207225
Entrez Gene ID:208727
Ensembl ID:ENSMUSG00000026313

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 92003669 - 92006860

 Exon Info From UCSC:
NM_207225

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6827645Full LengthBC066052histone deacetylase 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_997108  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_207225 NP_997108 Q6NZM9 EC 3.5.1.98 Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC066052 AAH66052 Q6NZM9 EC 3.5.1.98
AK155250 BAE33147 Q6NZM9 EC 3.5.1.98
AK162369 BAE36877 Q6NZM9 EC 3.5.1.98
AK164979 BAE37989 Q3TNU8  
AK029933 BAE43272 Q6NZM9 EC 3.5.1.98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdac4 NP_997108 R.norvegicus Hdac4 363287   XP_343630 99
H.sapiens HDAC4 9759 Gene Info NP_006028 94
A.gambiae AgaP_AGAP000410 1271834   XP_310688 52
D.melanogaster HDAC4 32278   NP_572868 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)