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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cd47, CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
Sequence ID:NM_010581
Entrez Gene ID:16423
Ensembl ID:ENSMUSG00000055447

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B5|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 49913876 - 49915008

NM_010581 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11794985576649855944
1805274986787749868224
5285904986913049869192
5916804988427749884366
6817884989428949894396
7898814989548149895573
8829744989646849896560
97510674989815249898244
106810994990689349906924
110019144991098149911795

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4187965Full LengthBC012667CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
3158056IncompleteBC009094CD47 antigen (Rh-related antigen, integrin-associated signal transducer)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010581 NP_034711   CD47
V-set_CD47

Related Sequences

 
mRNAGenPeptSwissProt
BC009094 AAH09094 Q61735
BC012667 AAH12667 Q61735
HQ585874 ADQ12919 E5Q371
AB012693 BAA25401 Q61735
AK050387 BAC34228 Q8C7F4
AK151922 BAE30800 Q61735
Q3U967
Z25524 CAA80978 Q61735

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd47 NP_034711 R.norvegicus Cd47 29364   NP_062068 92
H.sapiens CD47 961 Gene Info NP_001768 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)