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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Synpr, synaptoporin
Sequence ID:NM_001163032
NM_028052
Entrez Gene ID:72003
Ensembl ID:ENSMUSG00000056296

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14|14 A2

Chromosomal Position (from UCSC)

Chromosomal Position:14: 13284858 - 13615381

 Exon Info From UCSC:
NM_001163032
NM_028052

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4527827Full LengthBC026512synaptoporin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082328  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163032 NP_001156504 Q8BGN8  
NM_028052 NP_082328   MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC026512 AAH26512 Q8BGN8
AK005132 BAB23831 Q8BGN8
AK032442 BAC27871 Q8BGN8
AK049661 BAC33864 Q8BGN8
AK078223 BAC37181 Q8BGN8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Synpr NP_082328 R.norvegicus Synpr 66030   NP_076464 98
H.sapiens SYNPR 132204 Gene Info NP_001123475 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)