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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sypl2, synaptophysin-like 2
Sequence ID:NM_008596
Entrez Gene ID:17306
Ensembl ID:ENSMUSG00000027887

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 F3-H2

Chromosomal Position (from UCSC)

Chromosomal Position:3: 108212265 - 108226599

NM_008596 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12417108015183108017599
24182609108019494108019685
26102811108020505108020706
28122936108021958108022082
29373011108029040108029114
30123247108029281108029516

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1068035Full LengthBC030038synaptophysin-like 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032622  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008596 NP_032622 O89104 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC030038 AAH30038 O89104
AB010140 BAA32530 O89104
AK005920 BAB24316 Q9CVY7
AK083422 BAC38909 Q8BNK8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sypl2 NP_032622 R.norvegicus Sypl2 362018   NP_001102033 97
H.sapiens SYPL2 284612 Gene Info NP_001035799 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)