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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rplp1, Ribosomal protein, large, P1
Sequence ID:NM_018853
Entrez Gene ID:56040
Ensembl ID:ENSMUSG00000007892

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 61913283 - 61914539

NM_018853 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12396176108961761327
2403146176169461761768
3154686176216361762316

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655117Full LengthBC091747ribosomal protein, large, P1
5102711Full LengthBC092088ribosomal protein, large, P1
6410847Full LengthBC058685ribosomal protein, large, P1
6774435Full LengthBC092536ribosomal protein, large, P1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061341  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018853 NP_061341 Q58E35
P47955
Ribosomal_60s

Related Sequences

 
mRNAGenPeptSwissProt
U29402 AAA70106 Q58E35
P47955
BC058685 AAH58685 Q58E35
P47955
BC091747 AAH91747 Q58E35
P47955
BC092088 AAH92088 Q58E35
P47955
BC092536 AAH92536 Q58E35
P47955
AK007832 BAB25292 Q58E35
P47955
AK010656 BAB27095 Q58E35
P47955
AK088070 BAC40128 Q58E35
P47955
AK169347 BAE41097 Q58E35
P47955

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rplp1 NP_061341 H.sapiens RPLP1 6176 Gene Info NP_000994 97
R.norvegicus LOC100360522 100360522   XP_002728498 97
R.norvegicus Rplp1 140661   NP_001007605 97
C.elegans rla-1 171766   NP_740801 68
D.melanogaster RpLP1 33214   NP_476630 66
N.crassa NCU08960 3876822   XP_960684 63
S.pombe rpp101 2543217   NP_593883 63
A.gambiae AgaP_AGAP007740 1278225   XP_317780 59
A.thaliana AT4G00810 828004   NP_567190 59
A.thaliana AT1G01100 839410   NP_849569 58
A.thaliana AT5G47700 834821   NP_001078728 57
S.pombe rpp102 2540299   NP_596671 57
S.pombe rpp103 2539598   NP_588562 56
S.cerevisiae RPP1A 851478   NP_010202 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)