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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ctsr, cathepsin R
Sequence ID:NM_020284
Entrez Gene ID:56835
Ensembl ID:ENSMUSG00000055679

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B2|13 35.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 61159214 - 61164188

NM_020284 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13616126057561260935
3624796126178461261901
4806426126251361262675
6438676126313061263354
86810176126380261263951
101811406126404161264163
114112776126446561264601
127813356126549161265548

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30712889Full LengthBC100338cathepsin R

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064680  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020284 NP_064680 Q497X4
Q9JIA9
Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProt
AF245399 AAF90051 Q497X4
Q9JIA9
BC100338 AAI00339 Q497X4
Q9JIA9
AY014778 AAK00507 Q497X4
Q9JIA9
AY943668 AAX39778 Q58IU7
AK005429 BAB24023 Q497X4
Q9JIA9
AK014432 BAB29345 Q497X4
Q9JIA9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsr NP_064680 R.norvegicus MGC114246 498688   NP_001017509 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)