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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pax1, paired box gene 1
Sequence ID:NM_008780
Entrez Gene ID:18503
Ensembl ID:ENSMUSG00000037034

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G2|2 82.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 147364993 - 147365994

NM_008780 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1313147190729147191041
314943147191468147192097
9441086147193612147193754
10871303147194114147194330
13042636147199449147200781

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055601Full LengthBC140989paired box gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032806  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008780 NP_032806 P09084 PAX

Related Sequences

 
mRNAGenPeptSwissProt
M69222 AAA39888 P09084
BC140989 AAI40990 Q548R5
AB080656 BAC10687 Q8K4Q2
AB080657 BAC10688 Q8K4Q1
AK134066 BAE21998 Q3UZ60

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pax1 NP_032806 R.norvegicus Pax1 311505   NP_001101257 96
H.sapiens PAX1 5075 Gene Info NP_006183 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)