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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Trim27, tripartite motif-containing 27
Sequence ID:NM_009054
Entrez Gene ID:19720
Ensembl ID:ENSMUSG00000021326

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 A3.1|13 10.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 21180212 - 21194723

NM_009054 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19562127182721272782
95710522127385221273947
105312832127560021275830
128413062127990921279931
130714222128172321281838
142314552128196021281992
145614822128308821283114
148323102128389821284725

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3482042Full LengthBC003219tripartite motif-containing 27
4936715IncompleteBC069924tripartite motif-containing 27

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033080  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009054 NP_033080 Q62158 zf-C3HC4
SPRY
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
L46855 AAA85354 Q62158
BC003219 AAH03219 Q62158
BC069924 AAH69924 Q6NSS3
AK088180 BAC40192 Q62158
X75343 CAA53092 Q62158

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trim27 NP_033080 R.norvegicus Trim27 291171   NP_001128446 100
H.sapiens TRIM27 5987 Gene Info NP_006501 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)