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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ltbr, lymphotoxin B receptor
Sequence ID:NM_010736
Entrez Gene ID:17000
Ensembl ID:ENSMUSG00000030339

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F3|6 60.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 125306574 - 125312288

NM_010736 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18918125256588125257488
9191135125257947125258163
11361161125259211125259236
11621269125259476125259583
12701349125262060125262139
13501446125262287125262383
14471605125262769125262927
16061731125263011125263136
17321828125263407125263503
18292109125263607125263887

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861610Full LengthBC138590lymphotoxin B receptor
8861611Full LengthBC138591lymphotoxin B receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034866  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010736 NP_034866 P50284 TNFR_c6

Related Sequences

 
mRNAGenPeptSwissProt
U29173 AAA68964 P50284
L38423 AAB00846 P50284
BC138590 AAI38591 B2RRV3
BC138591 AAI38592 B2RRV3
AK078859 BAC37424 Q8BJV0
AK146127 BAE26920 Q3UK82

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ltbr NP_034866 R.norvegicus Ltbr 297604   NP_001008316 93
H.sapiens LTBR 4055 Gene Info NP_002333 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)