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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Actr1a, ARP1 actin-related protein 1A, centractin alpha
Sequence ID:NM_016860
Entrez Gene ID:54130
Ensembl ID:ENSMUSG00000025228

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C3|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 46376813 - 46395735

 Exon Info From UCSC:
NM_016860

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599656Full LengthBC007131ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058556  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016860 NP_058556 P61164 Actin

Related Sequences

 
mRNAGenPeptSwissProt
BC007131 AAH07131 P61164
AB010297 BAA24423 P61164
AK010632 BAB27076 P61164
AK088062 BAC40124 P61164
AK167450 BAE39536 P61164
AK168889 BAE40706 P61164

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Actr1a NP_058556 H.sapiens ACTR1A 10121 Gene Info NP_005727 100
R.norvegicus Actr1a 294010   NP_001099834 100
D.melanogaster Arp87C 41566   NP_524331 79
A.gambiae AgaP_AGAP002127 1281358   XP_320908 78
C.elegans Y53F4B.22 175162   NP_497108 70
P.falciparum PFA_0190c 813175   XP_001350970 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)