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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Satb1, special AT-rich sequence binding protein 1
Sequence ID:NM_001163630
NM_001163631
NM_001163632
NM_009122
Entrez Gene ID:20230
Ensembl ID:ENSMUSG00000023927

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 C|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 51738902 - 51832647

 Exon Info From UCSC:
NM_001163630
NM_001163631
NM_001163632
NM_009122

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4164993Full LengthBC011132special AT-rich sequence binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033148  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163630 NP_001157102 Q60611  
NM_001163631 NP_001157103    
NM_001163632 NP_001157104    
NM_009122 NP_033148 Q60611 Homeobox
CUT

Related Sequences

 
mRNAGenPeptSwissProt
U05252 AAA17372 Q60611
BC011132 AAH11132 Q60611
AK088204 BAC40208 Q8C2Q2
AK088563 BAC40427 Q60611
AK158518 BAE34542 Q60611
CT010371 CAJ18578 Q60611

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Satb1 NP_001157102 R.norvegicus Satb1 316164   NP_001012129 100
H.sapiens SATB1 6304 Gene Info NP_002962 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)