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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cyb5, cytochrome b-5
Sequence ID:NM_025797
Entrez Gene ID:109672
Ensembl ID:ENSMUSG00000024646

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 E4|18 55.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 84851413 - 84879863

NM_025797 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11948502080585020998
1953238504089685041024
3243538504253185042560
3543888504721885047252
3897498504889485049254

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4973059Full LengthBC024341cytochrome b-5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080073  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025797 NP_080073 Q544Z9
P56395
Cyt-b5

Related Sequences

 
mRNAGenPeptSwissProt
BC024341 AAH24341 Q544Z9
P56395
AK002426 BAB22093 Q544Z9
P56395
AK013210 BAB28714 Q544Z9
P56395
AK132102 BAE20982 Q544Z9
P56395

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cyb5 NP_080073 R.norvegicus Cyb5a 64001   NP_071581 98
H.sapiens CYB5A 1528 Gene Info NP_683725 87
A.thaliana CB5-E 835438   NP_200168 51
C.elegans C31E10.7 181510   NP_510335 49
D.melanogaster Cyt-b5 35688   NP_610294 48
A.gambiae AgaP_AGAP007121 1269985   XP_308640 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)