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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hlcs, holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
Sequence ID:NM_139145
Entrez Gene ID:110948
Ensembl ID:ENSMUSG00000040820

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 C4|16 67.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 94129687 - 94268623

NM_139145 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
126609435091194353570
266128749435460694354819
287529899435625494356368
299031509436041494360574
315132189436295494363021
321934909445267094452941
349136739448419894484380
367446059448898294489913
460647689449014294490304
476948339450939894509462

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30012868Full LengthBC050090holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631884  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_139145 NP_631884 Q3TZ03
Q920N2
EC 6.3.4.11
EC 6.3.4.15
EC 6.3.4.9
EC 6.3.4.10
BPL_C
BPL_LipA_LipB

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC050090 AAH50090 Q3TZ03
Q920N2
EC 6.3.4.11
EC 6.3.4.15
EC 6.3.4.9
EC 6.3.4.10
AB066227 BAB68213 Q3TZ03
Q920N2
EC 6.3.4.11
EC 6.3.4.15
EC 6.3.4.9
EC 6.3.4.10
AK158212 BAE34407 Q3TZ03
Q920N2
EC 6.3.4.11
EC 6.3.4.15
EC 6.3.4.9
EC 6.3.4.10
AK168925 BAE40738 Q3TG10  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hlcs NP_631884 R.norvegicus Hlcs 288240   XP_221630 91
H.sapiens HLCS 3141 Gene Info NP_000402 77
A.gambiae AgaP_AGAP001481 1281690   XP_321640 36
A.thaliana HCS1 817112   NP_850067 36
D.melanogaster Hcs 40659   NP_649542 35
A.thaliana HCS2 840632   NP_850957 34
C.elegans bpl-1 174039   NP_495257 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)