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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tprn, taperin
Sequence ID:NM_175286
Entrez Gene ID:97031
Ensembl ID:ENSMUSG00000048707

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 25262617 - 25269882

NM_175286 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
119562511811725120072
195721702512435125124564
217122772512465225124758
227828082512487525125405

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6589951Full LengthBC089508RIKEN cDNA C430004E15 gene
4234957IncompleteBC055478RIKEN cDNA C430004E15 gene
4985483IncompleteBC047927RIKEN cDNA C430004E15 gene
5040365IncompleteBC024573RIKEN cDNA C430004E15 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175286 NP_780495 A2AI08  

Related Sequences

 
mRNAGenPeptSwissProt
BC024573 AAH24573 A2AI08
BC055478 AAH55478 A2AI08
BC089508 AAH89508 A2AI08
AK082888 BAC38669 A2AI08
AK165772 BAE38373 A2AI08
AK171799 BAE42670 A2AI08

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tprn NP_780495 R.norvegicus Tprn 499749   NP_001019480 95
H.sapiens TPRN 286262 Gene Info NP_001121700 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)