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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ch25h, cholesterol 25-hydroxylase
Sequence ID:NM_009890
Entrez Gene ID:12642
Ensembl ID:ENSMUSG00000050370

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C1|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 34473783 - 34475135

NM_009890 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1413653454827334549624

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4953185Full LengthBC039919cholesterol 25-hydroxylase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034020  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009890 NP_034020 Q9Z0F5 EC 1.14.99.38 Sterol_desat

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF059213 AAC97482 Q9Z0F5 EC 1.14.99.38
BC039919 AAH39919 Q9Z0F5 EC 1.14.99.38
AK140360 BAE24352 Q9Z0F5 EC 1.14.99.38
AK152770 BAE31482 Q9Z0F5 EC 1.14.99.38
AK160657 BAE35945 Q9Z0F5 EC 1.14.99.38

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ch25h NP_034020 R.norvegicus Ch25h 309527   NP_001020586 87
H.sapiens CH25H 9023 Gene Info NP_003947 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)