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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cald1, caldesmon 1
Sequence ID:NM_145575
Entrez Gene ID:109624
Ensembl ID:ENSMUSG00000029761

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B1|6 11.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 34745980 - 34755708

 Exon Info From UCSC:
NM_145575

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5148205Full LengthBC019435caldesmon 1
3602963IncompleteBC055908caldesmon 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663550  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145575 NP_663550 Q8VCQ8 Caldesmon

Related Sequences

 
mRNAGenPeptSwissProt
BC019435 AAH19435 Q8VCQ8
BC055908 AAH55908 Q7TMN5
AF439859 AAL33582 Q8VD79
AK148009 BAE28286 Q3UGC3
AK160593 BAE35900 Q3TUS1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cald1 NP_663550 R.norvegicus Cald1 25687   NP_037278 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)