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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rpl22, ribosomal protein L22
Sequence ID:NM_009079
Entrez Gene ID:19934
Ensembl ID:ENSMUSG00000028936

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 152325861 - 152332473

NM_009079 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1229151699986151700003
30134151701589151701693
135259151704112151704236
2602051151706388151708179

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1179671Full LengthBC096390ribosomal protein L22
3487607Full LengthBC007139ribosomal protein L22
4190569Full LengthBC021344ribosomal protein L22

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033105  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009079 NP_033105 P67984
Q4VAG4
Ribosomal_L22e

Related Sequences

 
mRNAGenPeptSwissProt
BC007139 AAH07139 P67984
Q4VAG4
BC021344 AAH21344 P67984
Q4VAG4
BC096390 AAH96390 P67984
Q4VAG4
D17653 BAA04546 P67984
Q4VAG4
AK168353 BAE40290 P67984
Q4VAG4
AK169078 BAE40863 P67984
Q4VAG4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl22 NP_033105 H.sapiens RPL22 6146 Gene Info NP_000974 99
R.norvegicus Rpl22 81768   NP_112366 99
A.thaliana AT3G05560 819722   NP_001078112 69
A.thaliana AT5G27770 832839   NP_198129 65
D.melanogaster RpL22 31022   NP_477134 64
A.gambiae AgaP_AGAP005046 1274727   XP_313917 59
C.elegans rpl-22 173873   NP_494932 58
S.pombe rpl22 2543021   NP_594940 53
N.crassa NCU06661 3877064   XP_960908 48
S.cerevisiae RPL22A 850750   NP_013162 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)