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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cpt2, carnitine palmitoyltransferase 2
Sequence ID:NM_009949
Entrez Gene ID:12896
Ensembl ID:ENSMUSG00000028607

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C7|4 54.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 107908198 - 107923537

NM_009949 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17598107576586107577167
5991903107579525107580829
19042010107585245107585351
20112091107586868107586948
20922366107595919107596193

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861534Full LengthBC138514carnitine palmitoyltransferase 2
40131162Full LengthBC145859carnitine palmitoyltransferase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034079  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009949 NP_034079 P52825 EC 2.3.1.21 Carn_acyltransf

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U01163 AAA18921 P52825 EC 2.3.1.21
BC138514 AAI38515 P52825 EC 2.3.1.21
BC145859 AAI45860 P52825 EC 2.3.1.21
AK018752 BAB31387 Q9CU20  
AK144441 BAE25892 Q3UN55  
AK150163 BAE29353 Q3UDA8  
AK169038 BAE40828 P52825 EC 2.3.1.21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpt2 NP_034079 R.norvegicus Cpt2 25413   NP_037062 93
H.sapiens CPT2 1376 Gene Info NP_000089 87
A.gambiae AgaP_AGAP008907 1279874   XP_552786 50
D.melanogaster CG2107 38355   NP_647756 47
C.elegans cpt-2 178025   NP_001040977 45
N.crassa NCU01611 3872670   XP_956522 38
S.cerevisiae YAT1 851285   NP_009420 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta