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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Aph1a, anterior pharynx defective 1a homolog (C. elegans)
Sequence ID:NM_146104
NM_146134
Entrez Gene ID:226548
Ensembl ID:ENSMUSG00000015750

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 95895143 - 95897807

 Exon Info From UCSC:
NM_146104
NM_146134

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3483214Full LengthBC012406anterior pharynx defective 1a homolog (C. elegans)
5098973Full LengthBC024111anterior pharynx defective 1a homolog (C. elegans)
5320175Full LengthBC057865anterior pharynx defective 1a homolog (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666216  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146104 NP_666216 Q6GTF1 Aph-1
NM_146134 NP_666246 Q8BVF7  

Related Sequences

 
mRNAGenPeptSwissProt
BC012406 AAH12406 Q8BVF7
Q6GTF1
BC024111 AAH24111 Q8BVF7
BC057865 AAH57865 Q6GTF1
AK078343 BAC37228 Q8BVF7
AK148400 BAE28531 Q6GTF1
AK152334 BAE31132 Q3U886
AX775953 CAE11676  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aph1a NP_666246 R.norvegicus Aph1a 365872   NP_001014277 99
H.sapiens APH1A 51107 Gene Info NP_001071096 99
D.melanogaster aph-1 33467   NP_608710 49
A.gambiae AgaP_AGAP009816 1279231   XP_318923 47
C.elegans aph-1 172747   NP_492469 36
A.thaliana AT2G31440 817702   NP_565724 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)