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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpl27a, Ribosomal protein L27A
Sequence ID:NM_011975
Entrez Gene ID:26451
Ensembl ID:ENSMUSG00000046364

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 E2-F1|7 51.55

Chromosomal Position (from UCSC)

Chromosomal Position:7: 109519196 - 109521772

NM_011975 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
128116662708116662735
2992116663098116663161
93168116663431116663506
169343116663981116664155
3441112116665114116665882

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6411497Full LengthBC081430ribosomal protein L27a
6760797Full LengthBC086939ribosomal protein L27a
6817520Full LengthBC056958ribosomal protein L27a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036105  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011975 NP_036105 P14115 L15

Related Sequences

 
mRNAGenPeptSwissProt
BC056958 AAH56958 P14115
BC081430 AAH81430 P14115
BC086939 AAH86939 P14115
AK007837 BAB25295 P14115
AK008531 BAB25724 P14115
AK010286 BAB26822 P14115
AK150907 BAE29949 P14115
AK167792 BAE39822 P14115
AK167915 BAE39922 P14115
X05021 CAA28678 P14115

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl27a NP_036105 M.musculus Gm7536 665189 Gene Info XP_980250 100
R.norvegicus Rpl27a 293418   NP_001099760 99
H.sapiens RPL27A 6157 Gene Info NP_000981 97
A.gambiae AgaP_AGAP011706 1280931   XP_320804 76
C.elegans Y37E3.8 171767   NP_490927 72
D.melanogaster RpL27A 33654   NP_476963 71
A.thaliana RPL27AB 838938   NP_173743 68
A.thaliana AT1G70600 843397   NP_177217 68
S.pombe rpl2801 2541130   NP_596326 66
P.falciparum PFF0885w 3885802   XP_966168 66
S.pombe rpl2802 2539548   NP_587907 65
S.cerevisiae RPL28 852775   NP_011412 63
N.crassa NCU03806 3877355   XP_961195 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)