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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Apoe, Apolipoprotein E
Sequence ID:NM_009696
Entrez Gene ID:11816
Ensembl ID:ENSMUSG00000002985

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7 4.0

Chromosomal Position (from UCSC)

Chromosomal Position:7: 19696272 - 19699052

NM_009696 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
168752028159220282451
87610442028282720282995
104511102028353620283601
111112662028435920284514

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5136415Full LengthBC028816apolipoprotein E
6818357Full LengthBC083351apolipoprotein E

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033826  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009696 NP_033826 Q6GTX3
P08226
Apolipoprotein

Related Sequences

 
mRNAGenPeptSwissProt
M12414 AAA37251 Q6GTX3
P08226
M73490 AAA37252 P08226
BC028816 AAH28816 Q6GTX3
BC083351 AAH83351 P08226
Q3TXU4
AK075843 BAC36000 Q8C6E4
AK134921 BAE22338 P08226
Q3TXU4
AK149111 BAE28740 Q3UF21
AK149568 BAE28964 Q3UEE7
AK150834 BAE29894 Q3UBS0
AK159105 BAE34821 P08226
Q3TXU4
AK159424 BAE35071 Q3TX45
AK159517 BAE35147 P08226
Q3TXU4
CT010212 CAJ18420 Q4FK40
CT010356 CAJ18564 Q6GTX3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Apoe NP_033826 R.norvegicus Apoe 25728   NP_620183 92
H.sapiens APOE 348 Gene Info NP_000032 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)