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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ergic1, endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Sequence ID:NM_026170
Entrez Gene ID:67458
Ensembl ID:ENSMUSG00000001576

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17|17 B1

Chromosomal Position (from UCSC)

Chromosomal Position:17: 26561612 - 26655175

NM_026170 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11212669845626698576
1221832674553726745598
1842562675130026751372
2573512676153426761628
3524762676649926766623
4775812677136126771465
5826422677293026772990
6437432677568726775787
7448662677852626778648
86727332679201126793877

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3494155Full LengthBC005516endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
30432732Full LengthBC083144endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080446  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026170 NP_080446 Q9DC16
Q4FK22
DUF1692

Related Sequences

 
mRNAGenPeptSwissProt
BC005516 AAH05516 Q9DC16
Q4FK22
BC083144 AAH83144 Q9DC16
Q4FK22
AK004629 BAB23423 Q9DC16
Q4FK22
AK084385 BAC39170 Q9DC16
Q4FK22
AK088157 BAC40179 Q9DC16
Q4FK22
AK173123 BAD32401 Q69ZP5
AK151239 BAE30231 Q9DC16
Q4FK22
AB093571 BAF82010 Q4FK22
CT010230 CAJ18438 Q9DC16
Q4FK22

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ergic1 NP_080446 H.sapiens ERGIC1 57222 Gene Info NP_001026881 99
R.norvegicus Ergic1 287177   XP_001066818 99
C.elegans Y102A11A.6 180517   NP_508375 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)