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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cxcl12, chemokine (C-X-C motif) ligand 12
Sequence ID:NM_001012477
NM_013655
NM_021704
Entrez Gene ID:20315
Ensembl ID:ENSMUSG00000061353

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F1|6 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 117168576 - 117175005

 Exon Info From UCSC:
NM_001012477
NM_013655
NM_021704

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3483088Full LengthBC006640chemokine (C-X-C motif) ligand 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038683  NP_001012495  NP_068350  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001012477 NP_001012495   IL8
NM_013655 NP_038683 P40224 IL8
NM_021704 NP_068350 P40224 IL8

Related Sequences

 
mRNAGenPeptSwissProt
L12029 AAA40100 P40224
L12030 AAA40101 P40224
S74318 AAB32650 P40224
BC006640 AAH06640 P40224
D21072 BAA04648 P40224
D43804 BAA07862 P40224
D43805 BAA07863 P40224
AK045092 BAC32216 P40224
AK075596 BAC35845 P40224
AK157553 BAE34120 P40224
CT010389 CAJ18596 P40224

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl12 NP_001012495 R.norvegicus Cxcl12 24772   NP_001029055 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta