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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Capn6, calpain 6
Sequence ID:NM_007603
Entrez Gene ID:12338
Ensembl ID:ENSMUSG00000067276

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F2|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 143816061 - 143827332

 Exon Info From UCSC:
NM_007603

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6517565Full LengthBC052167calpain 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031629  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007603 NP_031629 O35646
Q80VZ1
C2
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProt
BC052167 AAH52167 Q80VZ1
AK145116 BAE26243 O35646
Y12582 CAA73161 O35646

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Capn6 NP_031629 R.norvegicus Capn6 83685   NP_113996 99
H.sapiens CAPN6 827 Gene Info NP_055104 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)