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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Galnt1, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Sequence ID:NM_001160404
NM_013814
Entrez Gene ID:14423
Ensembl ID:ENSMUSG00000000420

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18|18 B1

Chromosomal Position (from UCSC)

Chromosomal Position:18: 24205993 - 24286810

 Exon Info From UCSC:
NM_001160404
NM_013814

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30019829Full LengthBC056215UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
30626890Full LengthBC090962UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
4482747IncompleteBC038627UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038842  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001160404 NP_001153876      
NM_013814 NP_038842 O08912 EC 2.4.1.41 Glycos_transf_2
Ricin_B_lectin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U73820 AAB58477 O08912 EC 2.4.1.41
BC056215 AAH56215 O08912 EC 2.4.1.41
BC090962 AAH90962 O08912 EC 2.4.1.41
AK148550 BAE28617 Q3UFE4  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Galnt1 NP_001153876 R.norvegicus Galnt1 79214   NP_077349 99
H.sapiens GALNT1 2589 Gene Info NP_065207 98
A.gambiae AgaP_AGAP008613 1275461   XP_314708 67
D.melanogaster pgant5 326151   NP_001036338 66
C.elegans gly-3 176112   NP_498722 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)