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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sdf2l1, Stromal cell-derived factor 2-like 1
Sequence ID:NM_022324
Entrez Gene ID:64136
Ensembl ID:ENSMUSG00000022769

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A3|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 17130141 - 17132323

NM_022324 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
116611713023017130880
6628581713168917131885
85911181713221617132475

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6508268Full LengthBC053425stromal cell-derived factor 2-like 1
3968302IncompleteBC023290stromal cell-derived factor 2-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071719  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022324 NP_071719 Q9ESP1 MIR

Related Sequences

 
mRNAGenPeptSwissProt
BC053425 AAH53425 Q9ESP1
AB043006 BAB18276 Q9ESP1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sdf2l1 NP_071719 R.norvegicus Sdf2l1 680945   NP_001102903 97
H.sapiens SDF2L1 23753 Gene Info NP_071327 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)