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Gene Info

Gene Information For:Mm. Psma6, Proteasome (prosome, macropain) subunit, alpha type 6
Sequence ID:NM_011968
Entrez Gene ID:26443
Ensembl ID:ENSMUSG00000021024

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C1|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 55398915 - 55418294

NM_011968 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11675649981156499977
1682625650845556508549
2633445650898856509069
3455005651111356511268
5016795651317356513351
6807745651539056515484
7759975651922356519445

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30681804Full LengthBC086685proteasome (prosome, macropain) subunit, alpha type 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036098  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011968 NP_036098 Q9QUM9 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF060087 AAD50532 Q9QUM9 EC 3.4.25.1
U60288 AAF21459 Q9QUM9 EC 3.4.25.1
BC086685 AAH86685 Q9QUM9 EC 3.4.25.1
AK088143 BAC40169 Q9QUM9 EC 3.4.25.1
AK152915 BAE31592 Q9QUM9 EC 3.4.25.1
AK161662 BAE36518 Q9QUM9 EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Psma6 NP_036098 H.sapiens PSMA6 5687 Gene Info NP_002782 100
R.norvegicus Psma6 29673   NP_058979 100
A.gambiae AgaP_AGAP003935 1278761   XP_318387 74
D.melanogaster Prosalpha1 45780   NP_524837 67
D.melanogaster CG30382 246582   NP_724616 67
A.thaliana PAA1 833524   NP_198409 64
A.thaliana PAA2 815135   NP_178641 63
N.crassa NCU10061 3874054   XP_957907 63
S.pombe SPBC646.16 2541139   NP_595374 59
C.elegans pas-1 179941   NP_506571 57
S.cerevisiae SCL1 852873   NP_011504 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)