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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Htra1, HtrA serine peptidase 1
Sequence ID:NM_019564
Entrez Gene ID:56213
Ensembl ID:ENSMUSG00000006205

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 130936234 - 130985653

NM_019564 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1541138079716138080256
542641138105026138105125
642846138105486138105690
8471041138122814138123008
10421074138123465138123497
10751189138125170138125284
11901247138125750138125807
12481343138127173138127268
13442038138128476138129170

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4235912Full LengthBC013516HtrA serine peptidase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062510  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019564 NP_062510 Q9R118 Trypsin
PDZ
Kazal_2

Related Sequences

 
mRNAGenPeptSwissProt
AF172994 AAD49422 Q9R118
AF179369 AAD52682 Q9R118
BC013516 AAH13516 Q9R118
AK090320 BAC41168 Q9R118
AK090321 BAC41169 Q9R118
AK132270 BAE21071  
AK167667 BAE39716  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Htra1 NP_062510 R.norvegicus Htra1 65164   NP_113909 98
H.sapiens HTRA1 5654 Gene Info NP_002766 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)