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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Arid3a, AT rich interactive domain 3A (BRIGHT-like)
Sequence ID:NM_007880
Entrez Gene ID:13496
Ensembl ID:ENSMUSG00000019564

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 79951932 - 79954684

NM_007880 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11857938981679390000
1868397939337979394032
84011527939451079394822
115312257940922979409301
122614097941160479411787
141016577941210979412356
165819547941337279413668
195520537941399279414090
205453267941448479417756

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6831312Full LengthBC050925AT rich interactive domain 3A (BRIGHT-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031906  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007880 NP_031906 Q62431 ARID

Related Sequences

 
mRNAGenPeptSwissProt
U60335 AAB03416 Q62431
BC050925 AAH50925 Q62431
AK141283 BAE24635 Q62431
AK154956 BAE32951 Q62431

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arid3a NP_031906 R.norvegicus Arid3a 314616   NP_001101536 94
H.sapiens ARID3A 1820 Gene Info NP_005215 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)