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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Taf9, TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Sequence ID:NM_001015889
Entrez Gene ID:108143
Ensembl ID:ENSMUSG00000052293

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 100654189 - 100656060

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3994683Full LengthBC108348TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
4024616Full LengthBC019453TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
5006430Full LengthBC042723TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
5692221Full LengthBC043028TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081415  NP_001015889  NP_081868  

Protein Infomation

NM_001015889 NP_001015889 Q8VI33   TFIID-31kDa
NM_027139 NP_081415 Q8VI33   TFIID-31kDa
NM_027592 NP_081868 Q8VCP8 EC AAA

Related Sequences

BC019453 AAH19453 Q8VCP8 EC
BC042723 AAH42723 Q8VI33  
BC043028 AAH43028 Q8VI33  
BC108348 AAI08349 Q8VI33  
AF305839 AAL47693 Q8VI33  
AK009322 BAB26216 Q8VI33  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Taf9 NP_001015889 R.norvegicus Taf9 373541   NP_908937 97
H.sapiens TAF9 6880 Gene Info NP_001015892 96
D.melanogaster e(y)1 32762   NP_523391 59
A.gambiae AgaP_AGAP003094 1273770   XP_312783 46
S.pombe taf9 2543133   NP_592893 44
S.cerevisiae TAF9 855276   NP_013963 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)