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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col13a1, collagen, type XIII, alpha 1
Sequence ID:NM_007731
Entrez Gene ID:12817
Ensembl ID:ENSMUSG00000058806

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B4|10 31.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 61848731 - 61978121

 Exon Info From UCSC:
NM_007731

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5025449Full LengthBC034164collagen, type XIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031757  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007731 NP_031757   Collagen

Related Sequences

 
mRNAGenPeptSwissProt
U30292 AAC24314 Q9R1N9
BC034164 AAH34164 Q8K036
AK031287 BAC27334 Q8CD80

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col13a1 NP_031757 R.norvegicus Col13a1 499431   NP_001102642 96
H.sapiens COL13A1 1305 Gene Info NP_001123575 85
D.melanogaster CG42342 7354466   NP_001189234 54
C.elegans col-99 185112   NP_499869 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)