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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Csta, cystatin A
Sequence ID:NM_001033239
Entrez Gene ID:209294
Ensembl ID:ENSMUSG00000034362

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B3|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 36119945 - 36131189

NM_001033239 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124243612003136122454
242525263612505936125160
252727313613107036131274

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862178Full LengthBC139156cystatin A
8862179Full LengthBC139157cystatin A

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033239 NP_001028411 P56567  

Related Sequences

 
mRNAGenPeptSwissProt
BC139156 AAI39157 B2RT71
BC139157 AAI39158 B2RT71
AK137702 BAE23468 P56567

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Csta NP_001028411 M.musculus Gm5483 433016 Gene Info NP_001076016 77
R.norvegicus Csta 288067   NP_001099346 77
M.musculus 2010005H15Rik 76770 Gene Info NP_084009 75
H.sapiens CSTA 1475 Gene Info NP_005204 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)