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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Copa, coatomer protein complex subunit alpha
Sequence ID:NM_009938
Entrez Gene ID:12847
Ensembl ID:ENSMUSG00000026553

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H3|1 93.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 172082935 - 172089149

 Exon Info From UCSC:
NM_009938

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498656Full LengthBC047429coatomer protein complex subunit alpha
5097228Full LengthBC024070coatomer protein complex subunit alpha
3498647IncompleteBC005609coatomer protein complex subunit alpha
3983999IncompleteBC082785coatomer protein complex subunit alpha
5012563IncompleteBC025896coatomer protein complex subunit alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034068  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009938 NP_034068 Q8CIE6
Q8BTF0
WD40
Coatomer_WDAD
COPI_C

Related Sequences

 
mRNAGenPeptSwissProt
AF248032 AAG00913 Q9ET41
BC005609 AAH05609 Q99JW9
BC024070 AAH24070 Q8CIE6
BC025896 AAH25896 Q8R393
BC047429 AAH47429 Q8CIE6
BC082785 AAH82785 Q63ZW9
AK032071 BAC27682 Q8BTF3
AK043479 BAC31555 Q8BTF0
AK171625 BAE42571 Q3TAU7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Copa NP_034068 R.norvegicus Copa 304978   NP_001128012 99
H.sapiens COPA 1314 Gene Info NP_001091868 98
A.gambiae AgaP_AGAP010251 1279675   XP_319442 72
D.melanogaster alphaCop 38199   NP_477395 72
C.elegans Y71F9AL.17 171860   NP_491069 61
A.thaliana AT1G62020 842497   NP_176393 57
A.thaliana AT2G21390 816678   NP_179734 57
N.crassa NCU10066 3874028   XP_957881 51
S.pombe SPBPJ4664.04 2541412   NP_595279 49
S.cerevisiae COP1 851410   NP_010136 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)