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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Whrn, whirlin
Sequence ID:NM_001008791
NM_001008792
NM_001008793
NM_001008794
NM_001008795
NM_001008796
NM_001008797
NM_001008798
NM_028640
Entrez Gene ID:73750
Ensembl ID:ENSMUSG00000039137

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C1|4 31.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 63414911 - 63416030

 Exon Info From UCSC:
NM_001008791
NM_001008792
NM_001008793
NM_001008794
NM_001008795
NM_001008796
NM_001008797
NM_001008798
NM_028640

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087668Full LengthBC150757whirlin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001008793  NP_001008795  NP_001008798  NP_001008797  NP_082916  NP_001008791  NP_001008794  NP_001008792  NP_001008796  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001008791 NP_001008791 Q80VW5 PDZ
NM_001008792 NP_001008792   PDZ
NM_001008793 NP_001008793 Q80VW5 PDZ
NM_001008794 NP_001008794   PDZ
NM_001008795 NP_001008795   PDZ
NM_001008796 NP_001008796   PDZ
NM_001008797 NP_001008797   PDZ
NM_001008798 NP_001008798   PDZ
NM_028640 NP_082916   PDZ

Related Sequences

 
mRNAGenPeptSwissProt
BC150757 AAI50758 B2RWY4
AY739114 AAV87519 Q80VW5
AY739115 AAV87520 Q80VW5
AY739116 AAV87521 Q80VW5
AY739117 AAV87522 Q80VW5
AY739118 AAV87523 Q80VW5
AY739119 AAV87524 Q80VW5
AY739120 AAV87525 Q80VW5
AY739121 AAV87526 Q80VW5
AY739122 AAV87527 Q80VW5
HQ148552 AEL23234 I6MML6
HQ148553 AEL23235 I6MML7
AK021254 BAB32350 Q9CY67
AK122523 BAC65805 Q80VW5
AK157955 BAE34281 Q80VW5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Whrn NP_001008792 R.norvegicus Dfnb31 313255   NP_851602 97
H.sapiens DFNB31 25861 Gene Info NP_056219 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)