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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Csgalnact2, chondroitin sulfate N-acetylgalactosaminyltransferase 2
Sequence ID:NM_030165
Entrez Gene ID:78752
Ensembl ID:ENSMUSG00000042042

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 118108188 - 118139140

NM_030165 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
171958118057470118059411
19592040118064383118064464
20412135118069627118069721
21362314118070962118071140
23152416118074329118074430
24172633118076139118076355
26343558118078712118079636
35593676118089040118089157

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4010410IncompleteBC023112chondroitin sulfate N-acetylgalactosaminyltransferase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084441  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_030165 NP_084441 Q8C1F4 EC 2.4.1.174 CHGN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC023112 AAH23112 Q8C1F4 EC 2.4.1.174
AK019496 BAB31761 Q8C1F4 EC 2.4.1.174
AK028045 BAC25717 Q8C1F4 EC 2.4.1.174

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Csgalnact2 NP_084441 R.norvegicus Csgalnact2 297554   NP_001100086 97
H.sapiens CSGALNACT2 55454 Gene Info NP_061060 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)