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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hdlbp, high density lipoprotein (HDL) binding protein
Sequence ID:NM_133808
Entrez Gene ID:110611
Ensembl ID:ENSMUSG00000034088

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1 55.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 93405942 - 93406734

 Exon Info From UCSC:
NM_133808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3585871Full LengthBC021765high density lipoprotein (HDL) binding protein
4458160Full LengthBC035301high density lipoprotein (HDL) binding protein
5324951Full LengthBC025648high density lipoprotein (HDL) binding protein
5346979Full LengthBC027788high density lipoprotein (HDL) binding protein
5354010Full LengthBC027779high density lipoprotein (HDL) binding protein
5354293Full LengthBC023806high density lipoprotein (HDL) binding protein
5356851IncompleteBC027067high density lipoprotein (HDL) binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598569  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133808 NP_598569 Q3U4Z7
Q8VDJ3
KH_1

Related Sequences

 
mRNAGenPeptSwissProt
BC021765 AAH21765 Q3U4Z7
Q8VDJ3
BC023806 AAH23806 Q3U4Z7
Q8VDJ3
BC025648 AAH25648 Q3U4Z7
Q8VDJ3
BC027067 AAH27067 A0PJE9
BC027779 AAH27779 Q3U4Z7
Q8VDJ3
BC027788 AAH27788 Q3U4Z7
Q8VDJ3
BC035301 AAH35301 Q3U4Z7
Q8VDJ3
AK048780 BAC33456 Q8BX68
AK132355 BAE21122 Q3V1M8
AK153965 BAE32283 Q3U4Z7
Q8VDJ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdlbp NP_598569 R.norvegicus Hdlbp 64474   NP_742036 99
H.sapiens HDLBP 3069 Gene Info NP_005327 98
A.gambiae AgaP_AGAP005467 3289973   XP_001237663 52
D.melanogaster Dp1 37116   NP_523781 48
C.elegans C08H9.2 174543   NP_496136 41
S.pombe vgl1 2539425   NP_588106 28
N.crassa NCU03897 3873690   XP_957536 27
S.cerevisiae SCP160 853365   NP_012455 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)