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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spsb1, SplA/ryanodine receptor domain and SOCS box containing 1
Sequence ID:NM_029035
Entrez Gene ID:74646
Ensembl ID:ENSMUSG00000039911

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 149897966 - 149909731

NM_029035 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
362093149270392149272449
20942935149280524149281365
29363089149328961149329114

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6416411Full LengthBC046787splA/ryanodine receptor domain and SOCS box containing 1
6416411Full LengthBC057563splA/ryanodine receptor domain and SOCS box containing 1
30608430Full LengthBC089357splA/ryanodine receptor domain and SOCS box containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083311  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029035 NP_083311 Q9D5L7 SPRY
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC046787 AAH46787 Q9D5L7
BC057563 AAH57563 Q9D5L7
BC089357 AAH89357 Q9D5L7
AF403036 AAL57355 Q9D5L7
AK015181 BAB29738 Q9D5L7
AK003707 BAC25049 Q9D5L7
AK030417 BAC26954 Q9D5L7
AK040909 BAC30739 Q9D5L7
AK089767 BAC40957 Q9D5L7
AK160081 BAE35613 Q9D5L7
AK172334 BAE42952 Q9D5L7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spsb1 NP_083311 R.norvegicus Spsb1 313722   NP_001101464 100
H.sapiens SPSB1 80176 Gene Info NP_079382 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)